ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-2240
source: miRBase, original name: ppc-mir-2240b (MI0011189)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCAGGGATTCTCAGTAGATT miRNA* TCTTCTGAAATCTCTGTTTCGATC mismatches: 3 bulges: 4 |
pre-miRNA
TACTCGCAACGTCCCTTATCTTCTGAAATCTCTGTTTCGATCACTAATTGGAGTGATCCCAGGGATTCTCAGTAGATTAGGGCATCGAGT
dot-bracket secondary structure
.(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
TACTCGCAACGTCCCTTATCTTCTGAAATCTCTGTTTCGATCACTAATTGGAGTGATCCCAGGGATTCTCAGTAGATTAGGGCATCGAGT
dot-bracket secondary structure
.(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..)))))
SIMILARITIES| miRBase ppc-mir-2240c: 3e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-2241: 4e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
