ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-2
source: miRBase, original name: lgi-mir-2c (MI0010101)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCACAGCCAGCTTTGATGAGT miRNA* CCATTAAAGTGGTTGTGATGTG mismatches: 2 bulges: 1 |
pre-miRNA
AACATTACCGGTATTTATGGAGATCCCATTAAAGTGGTTGTGATGTGTTAAATTCATCATATCACAGCCAGCTTTGATGAGTTCTTTATAAACAAAATCA
dot-bracket secondary structure
)............((((((((((.(.(((((((((((((((((((((..........))))))))))))).)))))))).).))))))))))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
AACATTACCGGTATTTATGGAGATCCCATTAAAGTGGTTGTGATGTGTTAAATTCATCATATCACAGCCAGCTTTGATGAGTTCTTTATAAACAAAATCA
dot-bracket secondary structure
)............((((((((((.(.(((((((((((((((((((((..........))))))))))))).)))))))).).))))))))))........
SIMILARITIES| miRBase bmo-mir-2b: 8.0E-8 PMRD no hits microPC no hits | UniProt no hits RFAM 2mir-2: 3.0E-7 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
