ABOUT THIS RECORDspecies: Lottia gigantea
source: miRBase, original name: lgi-mir-278 (MI0010133)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGTGGGACTTTCGTTCGTCT miRNA* GCGAGGGAAGGTTTTCGCCAATC mismatches: 6 bulges: 1 |
pre-miRNA
GAAACTATACAGCTTTATGTTACCTGCGAGGGAAGGTTTTCGCCAATCGTAAACTAAAGATCGGTGGGACTTTCGTTCGTCTGTGCTAGGCTACGAAACG
T
dot-bracket secondary structure
..........(((((...((.((..(((((.(((((.(..((((.(((..........))).))))..)))))).)))))..)))).)))))........
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GAAACTATACAGCTTTATGTTACCTGCGAGGGAAGGTTTTCGCCAATCGTAAACTAAAGATCGGTGGGACTTTCGTTCGTCTGTGCTAGGCTACGAAACG
T
dot-bracket secondary structure
..........(((((...((.((..(((((.(((((.(..((((.(((..........))).))))..)))))).)))))..)))).)))))........
.
SIMILARITIES| miRBase sko-mir-278: 0.000005 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
