ABOUT THIS RECORDspecies: Lottia gigantea
miRNA family: mir-375
source: miRBase, original name: lgi-mir-375 (MI0010212)
Taxonomy by NCBI:
Lottia gigantea Lottia Lottiidae Acmaeioidea Nacellina Docoglossa Eogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTCGTTCGGCTCGCGTTA miRNA* ACCCGAGCCGTTTGTAACAAGGC mismatches: 3 bulges: 1 |
pre-miRNA
TAGAGAAAAGTGGTCGCCAACTGACCCGAGCCGTTTGTAACAAGGCTTAAATTACAATGTTTTGTTCGTTCGGCTCGCGTTACAAAGGCTGACAAAGTCG
T
dot-bracket secondary structure
....((......((((((...((((.(((((((..((.((((((((............))))))))))..))))))).))))....))).)))....)).
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TAGAGAAAAGTGGTCGCCAACTGACCCGAGCCGTTTGTAACAAGGCTTAAATTACAATGTTTTGTTCGTTCGGCTCGCGTTACAAAGGCTGACAAAGTCG
T
dot-bracket secondary structure
....((......((((((...((((.(((((((..((.((((((((............))))))))))..))))))).))))....))).)))....)).
.
SIMILARITIES| miRBase dre-mir-375-2: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-375: 0.000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
