ABOUT THIS RECORDspecies: Schistosoma japonicum
source: miRBase, original name: sja-mir-2c (MI0015301)
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCACAGCCGTGCTTAAGGGC miRNA* CCTTGTTCGACTGTGATGTG mismatches: 4 bulges: 2 |
pre-miRNA
ATTCAGGCGCAACCCTTGTTCGACTGTGATGTGATTGAAATTAGCCCATATCACAGCCGTGCTTAAGGGCTTCGTCGAAA
dot-bracket secondary structure
)(((.((((...((((((..((.((((((((((.............)))))))))).))....))))))...))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
ATTCAGGCGCAACCCTTGTTCGACTGTGATGTGATTGAAATTAGCCCATATCACAGCCGTGCTTAAGGGCTTCGTCGAAA
dot-bracket secondary structure
)(((.((((...((((((..((.((((((((((.............)))))))))).))....))))))...))))))).
SIMILARITIES| miRBase sja-mir-2c: 1.0E-39 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-miR-2e-5p from Huang et al. (MNEST044014), sja-miR-2e-3p from Huang et al. |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
