ABOUT THIS RECORDspecies: Schistosoma japonicum
source: miRBase, original name: sja-mir-2d (MI0015302)
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCATCCATGGATTGTGATTTT miRNA* TATCACAGTCCTGCTTAGGTGACGA mismatches: 1 bulges: 5 |
pre-miRNA
CGACCAGTTCGTCATCCATGGATTGTGATTTTCGGACTCCATGTTTCATTAAGTGAATATCACAGTCCTGCTTAGGTGACGAATTTCGT
dot-bracket secondary structure
(((..(((((((((((((.((((((((((.(((..(((..(((...)))..)))))).))))))))))))....)))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
CGACCAGTTCGTCATCCATGGATTGTGATTTTCGGACTCCATGTTTCATTAAGTGAATATCACAGTCCTGCTTAGGTGACGAATTTCGT
dot-bracket secondary structure
(((..(((((((((((((.((((((((((.(((..(((..(((...)))..)))))).))))))))))))....)))))))))))))).
SIMILARITIES| miRBase sja-mir-2d: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
