ABOUT THIS RECORDspecies: Schistosoma japonicum
source: miRBase, original name: sja-mir-61 (MI0015290)
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACTAGAAAGTGCACTCACTT miRNA* GTACAGAGCATCATTTAGAGAAATG mismatches: 7 bulges: 3 |
pre-miRNA
CATTCTAACTTTACATCACATGACTAGAAAGTGCACTCACTTCCATCTCAGTACAGAGCATCATTTAGAGAAATGTGTCCACAGTAAAAATTCCCTATGT
TACGTAAATTTGCGTAAGTTCAATGTGTATTGTAGATTTATTA
dot-bracket secondary structure
...((((.(..((((((((((..(((((..((((.((.(((........)))..)).))))..)))))....)))))......................(
((((((....))))))).......)))))..))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
CATTCTAACTTTACATCACATGACTAGAAAGTGCACTCACTTCCATCTCAGTACAGAGCATCATTTAGAGAAATGTGTCCACAGTAAAAATTCCCTATGT
TACGTAAATTTGCGTAAGTTCAATGTGTATTGTAGATTTATTA
dot-bracket secondary structure
...((((.(..((((((((((..(((((..((((.((.(((........)))..)).))))..)))))....)))))......................(
((((((....))))))).......)))))..))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
