ABOUT THIS RECORDspecies: Schmidtea mediterranea
miRNA family: mir-31
source: miRBase, original name: sme-mir-31b-2 (MI0010945)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAAGATGCTGGCATAGCTGA miRNA* AGCTATTCAGGATCTTTCCATG mismatches: 4 bulges: 1 |
pre-miRNA
CAAGGCAAGATGCTGGCATAGCTGATAAACTATTTATTACCAGCTATTCAGGATCTTTCCATGA
dot-bracket secondary structure
((.((.(((((.((((.(((((((.(((........))).))))))))))).))))).)).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454
references
[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
CAAGGCAAGATGCTGGCATAGCTGATAAACTATTTATTACCAGCTATTCAGGATCTTTCCATGA
dot-bracket secondary structure
((.((.(((((.((((.(((((((.(((........))).))))))))))).))))).)).)).
SIMILARITIES| miRBase sme-mir-31b-3: 9e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-31: 0.0002 |
Identical with: sme-mir-31b-3 from miRBase (MNEST039077) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454
references
[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
