ABOUT THIS RECORDspecies: Schmidtea mediterranea
miRNA family: mir-124
source: miRBase, original name: sme-mir-124c-2 (MI0010936)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCCA miRNA* AAGCATTAACCCTGTTGTCTTAGA mismatches: 2 bulges: 3 |
pre-miRNA
CCATTATATTCATGAAGCATTAACCCTGTTGTCTTAGATAGTTTATTACAAAACATTTAAGGCACGCGGTGAATGCCATGTGAAATGG
dot-bracket secondary structure
(((((.....((((..(((((.(((.(((.(((((((((.((((......)))))))))))))))).))).)))))))))...)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454
references
[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
CCATTATATTCATGAAGCATTAACCCTGTTGTCTTAGATAGTTTATTACAAAACATTTAAGGCACGCGGTGAATGCCATGTGAAATGG
dot-bracket secondary structure
(((((.....((((..(((((.(((.(((.(((((((((.((((......)))))))))))))))).))).)))))))))...)))))
SIMILARITIES| miRBase spu-mir-124: 0.0000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 3e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454
references
[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
