miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST039105
species: Schmidtea mediterranea
miRNA family: mir-124
source: miRBase, original name: sme-mir-124c-2 (MI0010936)

Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGGCACGCGGTGAATGCCA

miRNA*
AAGCATTAACCCTGTTGTCTTAGA

mismatches: 2
bulges: 3

View larger
pre-miRNA
CCATTATATTCATGAAGCATTAACCCTGTTGTCTTAGATAGTTTATTACAAAACATTTAAGGCACGCGGTGAATGCCATGTGAAATGG

dot-bracket secondary structure
(((((.....((((..(((((.(((.(((.(((((((((.((((......)))))))))))))))).))).)))))))))...)))))


SIMILARITIES
miRBase spu-mir-124: 0.0000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-124: 3e-41

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454

references

[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"




Liczniki na strone;