ABOUT THIS RECORDspecies: Schmidtea mediterranea
source: miRBase, original name: sme-mir-133b (MI0005162)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCATCAACCAGCA miRNA* CTGCTAGATGGTGAATCAAAA mismatches: 4 bulges: 1 |
pre-miRNA
AAAACACTTTTGTATTTGCTGCTAGATGGTGAATCAAAACCGTTTGGGTCTTGGTCCCCATCAACCAGCAATTTTCAAGTGTTTATC
dot-bracket secondary structure
.((((((((......((((((...(((((.(.(((((.(((.....))).))))).))))))...)))))).....))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Palakodeti D, Smielewska M, Graveley BR, RNA. 12:1640-1649(2006)., "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
AAAACACTTTTGTATTTGCTGCTAGATGGTGAATCAAAACCGTTTGGGTCTTGGTCCCCATCAACCAGCAATTTTCAAGTGTTTATC
dot-bracket secondary structure
.((((((((......((((((...(((((.(.(((((.(((.....))).))))).))))))...)))))).....))))))))...
SIMILARITIES| miRBase sme-mir-133b: 3e-44 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Palakodeti D, Smielewska M, Graveley BR, RNA. 12:1640-1649(2006)., "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology"
[2] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
