ABOUT THIS RECORDspecies: Schmidtea mediterranea
source: miRBase, original name: sme-mir-749 (MI0005175)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGGATGAGCCTCGGTGGT miRNA* CACCGAAGTGGTTCGATTCCACCTTTCCAGCGA mismatches: 2 bulges: 12 |
pre-miRNA
ATCGCTGGGATGAGCCTCGGTGGTCCGGGGTGCAGGCTTCAAACCTGTAGTCGGTTGACACCGAAGTGGTTCGATTCCACCTTTCCAGCGAT
dot-bracket secondary structure
((((((((((((((((((((((..(((.(.((((((.......)))))).))))....))))))...)))))).........))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454, Solexa
references
[1] Palakodeti D, Smielewska M, Graveley BR, RNA. 12:1640-1649(2006)., "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology"
[2] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
ATCGCTGGGATGAGCCTCGGTGGTCCGGGGTGCAGGCTTCAAACCTGTAGTCGGTTGACACCGAAGTGGTTCGATTCCACCTTTCCAGCGAT
dot-bracket secondary structure
((((((((((((((((((((((..(((.(.((((((.......)))))).))))....))))))...)))))).........))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 1e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454, Solexa
references
[1] Palakodeti D, Smielewska M, Graveley BR, RNA. 12:1640-1649(2006)., "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology"
[2] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
