ABOUT THIS RECORDspecies: Schmidtea mediterranea
miRNA family: mir-2147
source: miRBase, original name: sme-mir-2147b (MI0010806)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGAAAACTCGCACGTG miRNA* CGGCGAGTGTTCCCAC mismatches: 2 bulges: 1 |
pre-miRNA
CCTTCTTTGGATACTAACGGCGGAAAACTCGCACGTGTCCTCGTCAACTTCACGATTTCACGGCGAGTGTTCCCACGTTATTTCCAATTCTCGACA
dot-bracket secondary structure
......(((((...(((((..((((.((((((.((((...((((.......))))...)))))))))).))))..)))))..))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
CCTTCTTTGGATACTAACGGCGGAAAACTCGCACGTGTCCTCGTCAACTTCACGATTTCACGGCGAGTGTTCCCACGTTATTTCCAATTCTCGACA
dot-bracket secondary structure
......(((((...(((((..((((.((((((.((((...((((.......))))...)))))))))).))))..)))))..))))).........
SIMILARITIES| miRBase sme-mir-2147c: 0.0000000000003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N, Proc Natl Acad Sci U S A. 106:11546-11551(2009)., "High-resolution profiling and discovery of planarian small RNAs"
