ABOUT THIS RECORDspecies: Schmidtea mediterranea
miRNA family: mir-2147
source: miRBase, original name: sme-mir-2147d (MI0010941)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCACTGCGACTGTTCCCAT miRNA* CGGAAAACTCGCACCGTGATATT mismatches: 5 bulges: 2 |
pre-miRNA
TTGCTTTTGGATGTTAACATCGGAAAACTCGCACCGTGATATTGTCAACTTCACAATTTCACTGCGACTGTTCCCATGTTACTTCCAGTTTTCGGCA
dot-bracket secondary structure
.((((.(((((.((.(((((.((((...(((((..((((.(((((.......))))).)))))))))...)))).))))))).))))).....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
TTGCTTTTGGATGTTAACATCGGAAAACTCGCACCGTGATATTGTCAACTTCACAATTTCACTGCGACTGTTCCCATGTTACTTCCAGTTTTCGGCA
dot-bracket secondary structure
.((((.(((((.((.(((((.((((...(((((..((((.(((((.......))))).)))))))))...)))).))))))).))))).....))))
SIMILARITIES| miRBase sme-mir-2147d: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
