ABOUT THIS RECORDspecies: Schmidtea mediterranea
source: miRBase, original name: sme-mir-2204 (MI0010937)
Taxonomy by NCBI:
Schmidtea mediterranea Schmidtea Dugesiidae Paludicola Tricladida Seriata Turbellaria Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAACATCCGGACTAAGTTTAT miRNA* GAAATTAGGACGGAAATTAC mismatches: 6 bulges: 1 |
pre-miRNA
TACTGAAATTAGGACGGAAATTACACCAATCTACCAACAACGTTAATTAGTAAACATCCGGACTAAGTTTATACCCAATC
dot-bracket secondary structure
...((((.((((..((((..((((...(((..((.......))..))).))))...))))..)))).)))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
TACTGAAATTAGGACGGAAATTACACCAATCTACCAACAACGTTAATTAGTAAACATCCGGACTAAGTTTATACCCAATC
dot-bracket secondary structure
...((((.((((..((((..((((...(((..((.......))..))).))))...))))..)))).)))).........
SIMILARITIES| miRBase sme-mir-2204: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR, RNA. 15:1483-1491(2009)., "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
