ABOUT THIS RECORDspecies: Amphimedon queenslandica
source: miRBase, original name: aqu-mir-2019 (MI0010227a)
Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTGATCGGGTTGCCGTCTG miRNA* CACGGTAGCTTGCTCACTTAGA mismatches: 3 bulges: 0 |
pre-miRNA
CGATTCAAAGTGATCGGGTTGCCGTCTGAGCTCTAGCTAGCCATACCCAGGCCTTGTTAACTTAACCAGTCCTAGAGAAGGCTCTGGCTCACACGGTAGC
TTGCTCACTTAGAA
dot-bracket secondary structure
...(((.((((((.(((((((((((.((((((..((..((((.(..(.(((.((.((((...)))).)).))).)..).)))))))))))).))))))))
))).)))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP, Nature. 455:1193-1197(2008)., "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CGATTCAAAGTGATCGGGTTGCCGTCTGAGCTCTAGCTAGCCATACCCAGGCCTTGTTAACTTAACCAGTCCTAGAGAAGGCTCTGGCTCACACGGTAGC
TTGCTCACTTAGAA
dot-bracket secondary structure
...(((.((((((.(((((((((((.((((((..((..((((.(..(.(((.((.((((...)))).)).))).)..).)))))))))))).))))))))
))).)))))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP, Nature. 455:1193-1197(2008)., "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
