ABOUT THIS RECORDspecies: Amphimedon queenslandica
source: miRBase, original name: aqu-mir-2021 (MI0010282)
Taxonomy by NCBI:
Amphimedon queenslandica Amphimedon Niphatidae Haplosclerida Ceractinomorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGTGGTCGGTGTTTCGTGGA miRNA* CATGGAATATCGGCACCCATC mismatches: 2 bulges: 0 |
pre-miRNA
AGTGTTGTTGATGTCCATGGAATATCGGCACCCATCCAGTTAAAACCTTCAACGATCCACTCGTGCAGCTATGGGTCCCTAGACTAGCACCAGTGGGTGA
TTGTGTCAGGAGGTGTGTGATGGTGGTCGGTGTTTCGTGGACACCAACAATGCAA
dot-bracket secondary structure
.(((((((((.((((((((((((((((((..(((((((......((((((.((((((((((.(((((((((.(....).))).)).)))).)))))...)
))))....)))))).)).)))))..)))))))))))))))))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP, Nature. 455:1193-1197(2008)., "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals"
AGTGTTGTTGATGTCCATGGAATATCGGCACCCATCCAGTTAAAACCTTCAACGATCCACTCGTGCAGCTATGGGTCCCTAGACTAGCACCAGTGGGTGA
TTGTGTCAGGAGGTGTGTGATGGTGGTCGGTGTTTCGTGGACACCAACAATGCAA
dot-bracket secondary structure
.(((((((((.((((((((((((((((((..(((((((......((((((.((((((((((.(((((((((.(....).))).)).)))).)))))...)
))))....)))))).)).)))))..)))))))))))))))))).)))))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP, Nature. 455:1193-1197(2008)., "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals"
