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ABOUT THIS RECORD
ID:
MNEST039324
species:
Chlamydomonas reinhardtii
miRNA family:
MIR1144
source:
miRBase, original name:
cre-MIR1144a
(
MI0006205
)
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAACCGGGCACGCAGGAG
miRNA*
ACTCCGTGTCCGGCTCCAAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
CGGCGGCGTTGGACTGCTGGGGTGCAGCAGGCT
TGGAACCGGGCACGCAGGAG
GTGGGTTTTGTGGCGGCAGGNAGCAGGCAGCGCGGGGCTGCTGGTGG
TGGTGGAGGAGGATGAAGTTCGCCATTCAAACAACCCTTTCTGCACCGGTCCTGTGCTGCCCGTTGCCTGCAGGAGCAAAACACACCC
ACTCCGTGTCCG
GCTCCAAG
ATTGCTGAACCCCTGTCGCTGGCTGCTGCCG
dot-bracket secondary structure
(((((((((..(.(.((.(((((.((((((.((
((((.(((((((((.((..(
(((.(((((((....(((((.(((.((((((((((((((...(((.(
..(.(((((.(..((((........))))..)...))))))..)))))))))))))))))).))).)))))....))))))).)))).
.)).))))))))
).))))))
.)))))).))))).)).))..)).)))))))
SIMILARITIES
miRBase
cre-MIR1144a
:
1e-132
PMRD
cre-miR1144b
:
3e-28
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence:
cloned
references
[
1
] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC,
Nature. 447:1126-1129(2007).
,
"miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"