ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: miRBase, original name: cre-MIR1155 (MI0006217)
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGTCCTGCACGAGGAAGGAGC miRNA* TCGTTCCTCAAGCAGGACTCAA mismatches: 4 bulges: 0 |
pre-miRNA
TGAGGCTCGTTCCTCAAGCAGGACTCAAAGAACCCGATCAGCTTGTCGAGCACGACAAGGTGATCGTGTTTTCTTAGTCCTGCACGAGGAAGGAGCCCCA
dot-bracket secondary structure
.(.(((((.((((((..((((((((.(.(((((.((((((.(((((((....))))))).)))))).))))).).))))))))..)))))).))))).).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
TGAGGCTCGTTCCTCAAGCAGGACTCAAAGAACCCGATCAGCTTGTCGAGCACGACAAGGTGATCGTGTTTTCTTAGTCCTGCACGAGGAAGGAGCCCCA
dot-bracket secondary structure
.(.(((((.((((((..((((((((.(.(((((.((((((.(((((((....))))))).)))))).))))).).))))))))..)))))).))))).).
SIMILARITIES| miRBase no hits PMRD cre-miR1155: 5e-52 microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-miR1155 from PMRD (MNEST048455) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
