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ABOUT THIS RECORD
ID:
MNEST039346
species:
Chlamydomonas reinhardtii
source:
miRBase, original name:
cre-MIR1156
(
MI0006218
)
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGACCCTCGCATGTCCGTGA
miRNA*
ACCGACATGCGAGGGTCCACC
mismatches:
2
bulges:
0
View larger
pre-miRNA
TCTGATCTGCCTGAAGCTCCAGTTGAAACCTGGCAAGGTCGTGTGCCCTCTCC
ACCGACATGCGAGGGTCCACC
GCCGTGTGGCACAGGCTACCATGGTA
GCCAGTCTGCGCACCTGCAGCCAGCAGCTGAATTCATCAGCTGTCGGCTGCAGGTGCGCAGACTGGCTACCTTCGAAGCCTGGGCCTCACGGCGG
TGGAC
CCTCGCATGTCCGTGA
AGGGGGCTCATGACCCTACCCAGTTTCAGCTGGAGCTTCAGGCACATCAGA
dot-bracket secondary structure
((((((.((((((((((((((((((((((.(((...(((((((.(((((((.(
((.((((((((((((((((((
((((((.(((.((((((.(...((((
((((((((((((((((((((((.((((((((.....)))))))).))))))))))))))))))))))))))...).)))))).))).))))))))
)))))
))))))))))).))).
))))))).)))))))....))))))))))))))))))))))))).))))))
SIMILARITIES
miRBase
cre-MIR1156
:
3e-151
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC,
Nature. 447:1126-1129(2007).
,
"miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"