ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: MIR1161
source: miRBase, original name: cre-MIR1161a (MI0006222)
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTGGAGTTCTCAACAGC miRNA* TGGAGTTCTCAACAGCTAGG mismatches: 3 bulges: 5 |
pre-miRNA
GCCAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTTTGGTTTGGT
dot-bracket secondary structure
(((((.....((((...(((((((((((..(((..(((.((((((........))))))))))))..)))..))).))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
GCCAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTGACACCACACACCTACTGGAGTTCTCAACAGCTAGGTTTGGTTTGGT
dot-bracket secondary structure
(((((.....((((...(((((((((((..(((..(((.((((((........))))))))))))..)))..))).))))).)))))))))
SIMILARITIES| miRBase cre-MIR1161b: 1e-46 PMRD cre-miR1161: 1e-46 microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-miR1161 from PMRD (MNEST048459) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
