miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST039360
species:
Chlamydomonas reinhardtii
source:
miRBase, original name:
cre-MIR1164
(
MI0006225
)
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGTGCAACAGGCCAGTGGTT
miRNA*
CCACTGGCCTGTTGCACCAGC
mismatches:
0
bulges:
0
View larger
pre-miRNA
GGTGCTCTTC
TGGTGCAACAGGCCAGTGGTT
TGAGTGGTGGTCGACGGCAATTGCTTCAGTCTTACTTGCTTGGCTTACGTACGTACGCCTCAAGCAAGT
AAGACTGAAGCAATTGCTGCCGACCACCGATCAAA
CCACTGGCCTGTTGCACCAGC
AGAGCACT
dot-bracket secondary structure
((((((((.(
(((((((((((((((((((((
(((.(((((((((.((((((((((((((((((((((((((((((.(((....))).)))..))))))))
))))))))))))))))))).))))))))).)))))
)))))))))))))))))))).
))))))))
SIMILARITIES
miRBase
no hits
PMRD
cre-miR1164
:
6e-90
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
cre-miR1164
from PMRD (
MNEST048462
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC,
Nature. 447:1126-1129(2007).
,
"miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"