ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: miRBase, original name: cre-MIR1172 (MI0006233)
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGATCGGAGACGCAGTGAA miRNA* CGCTGAGTGTCCGAATCTACT mismatches: 4 bulges: 0 |
pre-miRNA
CAGTAGGATCGGAGACGCAGTGAAGCCCCCTTGCTGCTGCGATTCTTTCCGACTTACAACGTGCTCGTGGCGAGCACATTGTAGGTGTAGAGGATTGCAG
CAGCAACGGGGCTCCGCTGAGTGTCCGAATCTACTG
dot-bracket secondary structure
(((((((.(((((.((.(((((.((((((.((((((((((((((((((.(.((((((((.(((((((...))))))).))))))))).))))))))))))
)))))).)))))).))))).)).))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
CAGTAGGATCGGAGACGCAGTGAAGCCCCCTTGCTGCTGCGATTCTTTCCGACTTACAACGTGCTCGTGGCGAGCACATTGTAGGTGTAGAGGATTGCAG
CAGCAACGGGGCTCCGCTGAGTGTCCGAATCTACTG
dot-bracket secondary structure
(((((((.(((((.((.(((((.((((((.((((((((((((((((((.(.((((((((.(((((((...))))))).))))))))).))))))))))))
)))))).)))))).))))).)).))))).)))))))
SIMILARITIES| miRBase cre-MIR1172: 2e-73 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
