ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR160
source: miRBase, original name: pab-MIR160a (MI0016116)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCTTACAAGGAGCCAAGCATA mismatches: 3 bulges: 0 |
pre-miRNA
CAAAGGTTGATGTGTGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCATACGTTT
TCTTAC
dot-bracket secondary structure
)..(((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).))))))))).
.)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
CAAAGGTTGATGTGTGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCATACGTTT
TCTTAC
dot-bracket secondary structure
)..(((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).))))))))).
.)))..
SIMILARITIES| miRBase zma-MIR160b: 2.0E-8 PMRD pga-miR160: 5.0E-40 microPC miR160: 5.0E-40 | UniProt no hits RFAM 0mir-160: 1.0E-6 |
Identical with: miR160 from microPC (MNEST044974), pga-miR160 from PMRD , miR160 from microPC |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
