ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR396
source: miRBase, original name: pab-MIR396a (MI0016122)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTA miRNA* GCTCAAGAAAGCTGTGGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGGCGGATTCG
dot-bracket secondary structure
)....((((((((...(((((((((((((((((.((..(((..(((((....)))))..)))..)).)))))))))))))))))...))).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
GAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGGCGGATTCG
dot-bracket secondary structure
)....((((((((...(((((((((((((((((.((..(((..(((((....)))))..)))..)).)))))))))))))))))...))).))))).....
SIMILARITIES| miRBase tcc-MIR396c: 5.0E-9 PMRD ath-miR396b: 2.0E-8 microPC miR396: 7.0E-33 | UniProt no hits RFAM 6MIR396: 9.0E-8 |
Identical with: miR396 from microPC (MNEST046537) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
