ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR396
source: miRBase, original name: pab-MIR396c (MI0016124)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACGGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCCGTGGGAAGA mismatches: 1 bulges: 1 |
pre-miRNA
TAAGCCGGAGAATGCTCTCATATTTTTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGC
TCAAGAAAGCCGTGGGAAGAATATTAAAGGGATTCAATTTTAT
dot-bracket secondary structure
)........((((.((((.(((((((((((((((((((((((.((((...((((((..((((((((...........))))))))..)))).))..)))).
))))))))))))).))))))))))...))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TAAGCCGGAGAATGCTCTCATATTTTTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGC
TCAAGAAAGCCGTGGGAAGAATATTAAAGGGATTCAATTTTAT
dot-bracket secondary structure
)........((((.((((.(((((((((((((((((((((((.((((...((((((..((((((((...........))))))))..)))).))..)))).
))))))))))))).))))))))))...))))))))........
SIMILARITIES| miRBase pab-MIR396b: 2.0E-9 PMRD ptc-miRf10517-akr: 7.0E-6 microPC miR396: 1.0E-47 | UniProt no hits RFAM 6MIR396: 2.0E-6 |
Identical with: miR396 from microPC (MNEST046492) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
