ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR482
source: miRBase, original name: pab-MIR482a (MI0016126)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACTCCTCCCATTCC miRNA* AGTGGAAGGATAGGGTAAGACT mismatches: 1 bulges: 2 |
pre-miRNA
TTTGGAGGAGTGGAAGGATAGGGTAAGACTGCGGTTAAGTGAGTCTGCTTCAATAATTCTTTGCTCTAATCTCACCAGTCTTCCCTACTCCTCCCATTCCT
GTTGCCTTCATCACAGTT
dot-bracket secondary structure
)....((((((((.(((((((((.(((((((.......(((((...((..............))......))))))))))))))))).)))).))))))))
..................
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TTTGGAGGAGTGGAAGGATAGGGTAAGACTGCGGTTAAGTGAGTCTGCTTCAATAATTCTTTGCTCTAATCTCACCAGTCTTCCCTACTCCTCCCATTCCT
GTTGCCTTCATCACAGTT
dot-bracket secondary structure
)....((((((((.(((((((((.(((((((.......(((((...((..............))......))))))))))))))))).)))).))))))))
..................
SIMILARITIES| miRBase pab-MIR482b: 6.0E-9 PMRD pta-miR482c: 2.0E-8 microPC miR482: 6.0E-46 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
