ABOUT THIS RECORDspecies: Picea abies
miRNA family: miR482d
source: miRBase, original name: pab-MIR482d (MI0016120)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCTTGCGAGGATAGGAAAAA miRNA* TTTCCCACTCCTCCCAAGCCCA mismatches: 3 bulges: 1 |
pre-miRNA
AAGGCCAAAGGCTTGCGAGGATAGGAAAAACTCGTGTGGTGTATTTTCTCACTCACCGATCTACAGTTTTTCCCACTCCTCCCAAGCCCATGGCCTT
dot-bracket secondary structure
(((((((..((((((.(((((..(((((((((((.((((((........))).))))))......))))))))...))))).))))))..)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
AAGGCCAAAGGCTTGCGAGGATAGGAAAAACTCGTGTGGTGTATTTTCTCACTCACCGATCTACAGTTTTTCCCACTCCTCCCAAGCCCATGGCCTT
dot-bracket secondary structure
(((((((..((((((.(((((..(((((((((((.((((((........))).))))))......))))))))...))))).))))))..)))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
