ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR1311
source: miRBase, original name: pab-MIR1311 (MI0016132)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGAGTTTTGCCAGTTCCGCC miRNA* CGCACTGGCATAACTCTGACC mismatches: 2 bulges: 1 |
pre-miRNA
TGGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCCT
dot-bracket secondary structure
)((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TGGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCCT
dot-bracket secondary structure
)((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).))))
SIMILARITIES| miRBase pta-MIR1311: 1.0E-12 PMRD pta-miR1311: 1.0E-12 microPC miR1311: 8.0E-26 | UniProt no hits RFAM no hits |
Identical with: miR1311 from microPC (MNEST046092) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
