ABOUT THIS RECORDspecies: Picea abies
source: miRBase, original name: pab-MIR1863 (MI0016133)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTCTGATACCATGTTAGATT miRNA* TCTACGTGGGCTCAAGGCTTC mismatches: 4 bulges: 1 |
pre-miRNA
TCTTGCCATGACAGAGATTATCTCCTGATCTGCAAAACAAATACCTAGTGTAGGATCTACGTGGGCTCAAGGCTTCTTCTTGAGCTTCTTCACGTCCATA
GCTCTGATACCATGTTAGATTTTAGGGTAAAAATGAAAACAATA
dot-bracket secondary structure
..((((...(((((((.....)).))).)).))))......(((((....((((((((((((((..(((..(((....(.((((....)))).).....)
))..)))..))))).))))))))))))))...............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TCTTGCCATGACAGAGATTATCTCCTGATCTGCAAAACAAATACCTAGTGTAGGATCTACGTGGGCTCAAGGCTTCTTCTTGAGCTTCTTCACGTCCATA
GCTCTGATACCATGTTAGATTTTAGGGTAAAAATGAAAACAATA
dot-bracket secondary structure
..((((...(((((((.....)).))).)).))))......(((((....((((((((((((((..(((..(((....(.((((....)))).).....)
))..)))..))))).))))))))))))))...............
SIMILARITIES| miRBase osa-MIR1863: 0.00003 PMRD osa-miR1863: 0.00003 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
