ABOUT THIS RECORDspecies: Picea abies
source: miRBase, original name: pab-MIR3705 (MI0016107)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAAGTGGTTATGATCTGGAC miRNA* TATGGTTTCGATTATTTATTT mismatches: 7 bulges: 0 |
pre-miRNA
TTTTGCAGACGTAAGTGGTTATGATCTGGACGGCGGCAAGTTTAACGGGTGAGACCTCCAACTCCCTCTCTATGGATAGAATATATTATATATGATGCTT
TGCCTATGGTTTCGATTATTTATTTGTTTGTTTGA
dot-bracket secondary structure
....((((((((((((((((..((((.....(((((((........(((.(((........)))))).((((....))))...............)))).
.)))...))))..))))))))))..))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TTTTGCAGACGTAAGTGGTTATGATCTGGACGGCGGCAAGTTTAACGGGTGAGACCTCCAACTCCCTCTCTATGGATAGAATATATTATATATGATGCTT
TGCCTATGGTTTCGATTATTTATTTGTTTGTTTGA
dot-bracket secondary structure
....((((((((((((((((..((((.....(((((((........(((.(((........)))))).((((....))))...............)))).
.)))...))))..))))))))))..))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
