ABOUT THIS RECORDspecies: Picea abies
source: miRBase, original name: pab-MIR3711 (MI0016114)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCGCTAGAAGGAGGGCCT miRNA* CCCTCAAATAGAACCA mismatches: 7 bulges: 1 |
pre-miRNA
AAATGGCGCTAGAAGGAGGGCCTGAAAATTATTAATGGCACGAGGCAGTCGTAAGACTCCTCCACCACCCAACCACTCACCTATAGTGAAAAGAAGTCAT
TAAAATGATAACATCACCCCTCAAATAGAACCA
dot-bracket secondary structure
...(((..(((....(((((..(((..((((((((((((..((((.((((....))))))))..............((((.....))))......)))))
))..)))))....))).)))))...)))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
AAATGGCGCTAGAAGGAGGGCCTGAAAATTATTAATGGCACGAGGCAGTCGTAAGACTCCTCCACCACCCAACCACTCACCTATAGTGAAAAGAAGTCAT
TAAAATGATAACATCACCCCTCAAATAGAACCA
dot-bracket secondary structure
...(((..(((....(((((..(((..((((((((((((..((((.((((....))))))))..............((((.....))))......)))))
))..)))))....))).)))))...)))..)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
