ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR159
source: miRBase, original name: pta-MIR159a (MI0005778)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTCCA miRNA* GGAGCTCCCTTCAGTCCAACC mismatches: 0 bulges: 1 |
pre-miRNA
GATGTGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGC
CTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGC
TCCACTTATC
dot-bracket secondary structure
((((.((.(((((((((((((((((((..((.((.(((..((.((..((.((.((.(((..((((((((.(((((..((((((..((......))((((.
.(((.............)))..))))..))))))..))))).))))))))..))).)).)).))..)).))..))).)).))..))))))))))))))))
))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GATGTGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGC
CTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGC
TCCACTTATC
dot-bracket secondary structure
((((.((.(((((((((((((((((((..((.((.(((..((.((..((.((.((.(((..((((((((.(((((..((((((..((......))((((.
.(((.............)))..))))..))))))..))))).))))))))..))).)).)).))..)).))..))).)).))..))))))))))))))))
))))).))))
SIMILARITIES| miRBase pta-MIR319: 7e-115 PMRD pta-miR159a: 3e-117 microPC miR319: 2e-108 | UniProt no hits RFAM MIR159: 0.00001 |
Identical with: pta-miR159a from PMRD (MNEST051553) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
