ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR159
source: miRBase, original name: pta-MIR159b (MI0005779)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGAGAGCTCCC miRNA* GAGCTTTCTTCAGTCCAACG mismatches: 0 bulges: 0 |
pre-miRNA
TTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATT
GGCGGCAAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCCCAGAAA
dot-bracket secondary structure
.....((((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............
))..)))))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
TTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATT
GGCGGCAAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCCCAGAAA
dot-bracket secondary structure
.....((((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............
))..)))))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))).....
SIMILARITIES| miRBase no hits PMRD pta-miR159b: 8e-102 microPC miR159: 7e-96 | UniProt no hits RFAM no hits |
Identical with: pta-miR159b from PMRD (MNEST051554) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
