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ABOUT THIS RECORD

ID: MNEST039419
species: Pinus taeda
miRNA family: MIR159
source: miRBase, original name: pta-MIR159c (MI0005780)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCC

miRNA*
GAGCTGATTTTGTCCAGGA

mismatches: 3
bulges: 2

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pre-miRNA
GATGTGTGAATGATGCGGGAGCTGATTTTGTCCAGGAAATGTCTTTTCCTTGGATTGAAGGGAGCTCCCTTATGTAGCATACATT

dot-bracket secondary structure
((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))


SIMILARITIES
miRBase smo-MIR159: 0.000001

PMRD pta-miR159c: 4e-43

microPC miR319: 0.000004
UniProt no hits

RFAM MIR159: 0.00007

Identical with: pta-miR159c from PMRD (MNEST051555)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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