ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR390
source: miRBase, original name: pta-MIR390 (MI0005787)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCCCAGGATGGATAGCGCC miRNA* CGCTATCCCTCTGAGCTTTG mismatches: 2 bulges: 1 |
pre-miRNA
AATTATGAAGCCCAGGATGGATAGCGCCAGCCCCACTTGAAATTTGCAGTGGGCGCTATCCCTCTGAGCTTTGTAATT
dot-bracket secondary structure
(((((..((((.((((..((((((((((.((..((.........))..)).)))))))))).)))).))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
AATTATGAAGCCCAGGATGGATAGCGCCAGCCCCACTTGAAATTTGCAGTGGGCGCTATCCCTCTGAGCTTTGTAATT
dot-bracket secondary structure
(((((..((((.((((..((((((((((.((..((.........))..)).)))))))))).)))).))))..)))))
SIMILARITIES| miRBase no hits PMRD pta-miR390: 5e-39 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR390 from PMRD (MNEST051563) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
