ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR408
source: miRBase, original name: pta-MIR408 (MI0005790)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CAGGGACGAGTTAGGGCATGG mismatches: 4 bulges: 0 |
pre-miRNA
GAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTC
dot-bracket secondary structure
(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTC
dot-bracket secondary structure
(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))
SIMILARITIES| miRBase vvi-MIR408: 0.000004 PMRD pta-miR408: 1e-43 microPC miR408: 0.00002 | UniProt no hits RFAM MIR408: 0.00007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
