ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR482
source: miRBase, original name: pta-MIR482a (MI0005791)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACTCCTCCCATTCC miRNA* TGTGGAAGGATAGGGTAAGACT mismatches: 2 bulges: 2 |
pre-miRNA
GAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTT
dot-bracket secondary structure
((((.((((.(((((((((.((((((..((....((((((...............))))))...))))))))))))).)))).)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTT
dot-bracket secondary structure
((((.((((.(((((((((.((((((..((....((((((...............))))))...))))))))))))).)))).)))).))))
SIMILARITIES| miRBase pta-MIR482d: 7e-45 PMRD pta-miR482a: 3e-47 microPC miR482: 2e-42 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
