ABOUT THIS RECORDspecies: Pinus taeda
source: miRBase, original name: pta-MIR783 (MI0005793)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCTTTGCTGGTTCATTTTC miRNA* AGGGAGCTGGCGTGCATTT mismatches: 3 bulges: 2 |
pre-miRNA
TTCTTTTGAGGGAAGGGAGCTGGCGTGCATTTCTTTTTCAGATATTTCATTGCGTTCGCCAAGATGCTTTGCTGGTTCATTTTCCCTGAGATGAA
dot-bracket secondary structure
.((.(((.((((((((((((..(((.((((((........((....))...((....))..))))))..)))..)))).)))))))).))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
TTCTTTTGAGGGAAGGGAGCTGGCGTGCATTTCTTTTTCAGATATTTCATTGCGTTCGCCAAGATGCTTTGCTGGTTCATTTTCCCTGAGATGAA
dot-bracket secondary structure
.((.(((.((((((((((((..(((.((((((........((....))...((....))..))))))..)))..)))).)))))))).))).)).
SIMILARITIES| miRBase no hits PMRD pta-miR783: 5e-49 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR783 from PMRD (MNEST051571) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
