ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR946
source: miRBase, original name: pta-MIR946a (MI0005794)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCCTTCTCCTATCCACAA miRNA* GTGGATAGAGAAGGGTTAGT mismatches: 2 bulges: 1 |
pre-miRNA
CAGAGTGTATGGATGTGGATAGAGAAGGGTTAGTAAACGGTAGAAAACCCATTTATTGTATGTCATTGGCTGTTCGAGATTAAGCAGCTGTAATTCGATG
GCCATACTCATTAAATGGGTTGGCTGTTTGCTCTGTACCAGCCCTTCTCCTATCCACAATTGTACTAGTTTG
dot-bracket secondary structure
((((.((((..(.((((((((((((((((((((((((((((....((((((((((..(((((((((((((((((........)))))).......)))))
).)))))....)))))))))).)))))))))).......))))))))).))))))))).)..))).).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
[2] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CAGAGTGTATGGATGTGGATAGAGAAGGGTTAGTAAACGGTAGAAAACCCATTTATTGTATGTCATTGGCTGTTCGAGATTAAGCAGCTGTAATTCGATG
GCCATACTCATTAAATGGGTTGGCTGTTTGCTCTGTACCAGCCCTTCTCCTATCCACAATTGTACTAGTTTG
dot-bracket secondary structure
((((.((((..(.((((((((((((((((((((((((((((....((((((((((..(((((((((((((((((........)))))).......)))))
).)))))....)))))))))).)))))))))).......))))))))).))))))))).)..))).).))))
SIMILARITIES| miRBase pta-MIR946b: 6e-19 PMRD pta-miR946a: 1e-94 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR946a from PMRD (MNEST051573) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
[2] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
