ABOUT THIS RECORDspecies: Pinus taeda
source: miRBase, original name: pta-MIR1312 (MI0009709)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGAGAGAAAATGGCGACAT miRNA* ATCGCTATATCTCTCCTAATT mismatches: 3 bulges: 1 |
pre-miRNA
TCCCCCAAAACATCCATATCGCTATATCTCTCCTAATTAGGTTGAATCGAAACAGCCAACACTTTCAGTTGATTCAAATATTAGTTTGTTTCTGCATAAT
TTGGAGAGAAAATGGCGACATAGATGTTTTCGGCGAT
dot-bracket secondary structure
((.((.((((((((.((.(((((((.(((((((.((((((((((........)))))..........((.((..(((((....)))))..)).)).))))
).)))))))..))))))).)).)))))))).)).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
TCCCCCAAAACATCCATATCGCTATATCTCTCCTAATTAGGTTGAATCGAAACAGCCAACACTTTCAGTTGATTCAAATATTAGTTTGTTTCTGCATAAT
TTGGAGAGAAAATGGCGACATAGATGTTTTCGGCGAT
dot-bracket secondary structure
((.((.((((((((.((.(((((((.(((((((.((((((((((........)))))..........((.((..(((((....)))))..)).)).))))
).)))))))..))))))).)).)))))))).)).)).
SIMILARITIES| miRBase no hits PMRD pta-miR1312: 6e-74 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR1312 from PMRD (MNEST051586) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ, Genome Res. 18:571-584(2008)., "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa"
