ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR160
source: miRBase, original name: ppt-MIR160a (MI0005655)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCATCCAGGGAGCCAGACAGA mismatches: 2 bulges: 0 |
pre-miRNA
GGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCT
dot-bracket secondary structure
((((.(...(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GGAGTGGAACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGCCAAAGTGATTGTCGAGCTGCATAGCTGGCATCCAGGGAGCCAGACAGACCTCCT
dot-bracket secondary structure
((((.(...(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).))))).
SIMILARITIES| miRBase ppt-MIR160f: 7e-33 PMRD ppt-miR160a: 2e-51 microPC miR160: 0.00002 | UniProt no hits RFAM mir-160: 5e-43 |
Identical with: ppt-miR160a from PMRD (MNEST051359) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
