ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR160
source: miRBase, original name: ppt-MIR160b (MI0005656)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCTGGCTCCCTGTATGCCA miRNA* GCGTTCAGGGAGTCAAGCAGA mismatches: 3 bulges: 0 |
pre-miRNA
ATGCTAGATCCGCCTGGCTCCCTGTATGCCAACTGCGAGCCTTGCTAAATATTTGTTTGCCTTGATTCATAGCTGGCGTTCAGGGAGTCAAGCAGACCTT
GCG
dot-bracket secondary structure
..((.((.((.((.((((((((((.((((((.(((.((..(..(.(((((....))))).)..)..)).))).)))))).)))))))))).)).)).)).
)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
ATGCTAGATCCGCCTGGCTCCCTGTATGCCAACTGCGAGCCTTGCTAAATATTTGTTTGCCTTGATTCATAGCTGGCGTTCAGGGAGTCAAGCAGACCTT
GCG
dot-bracket secondary structure
..((.((.((.((.((((((((((.((((((.(((.((..(..(.(((((....))))).)..)..)).))).)))))).)))))))))).)).)).)).
)).
SIMILARITIES| miRBase ppt-MIR160i: 0.000000000001 PMRD ppt-miR160b: 9e-54 microPC miR160: 0.0003 | UniProt no hits RFAM mir-160: 9e-45 |
Identical with: ppt-miR160b from PMRD (MNEST051360) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
