ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR160
source: miRBase, original name: ppt-MIR160f (MI0005902)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCATCCAGGGAGCCAGACAGA mismatches: 2 bulges: 0 |
pre-miRNA
GTTCATGGTTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGG
GAGCCAGACAGACCTTTCTCTTGCCTCATCCGGGTCCC
dot-bracket secondary structure
.....(((.(((..((..((..(..((.(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))
))))))).))).))..)..))..))))).)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTTCATGGTTGAACGGTGGGGAGTTGGACTGCCTGGCTCCCTGTATGCCACCTGCGGGGCTTGTCAAAATGATTGCCAGGCTGCATAGCTGGCATCCAGG
GAGCCAGACAGACCTTTCTCTTGCCTCATCCGGGTCCC
dot-bracket secondary structure
.....(((.(((..((..((..(..((.(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))
))))))).))).))..)..))..))))).)))......
SIMILARITIES| miRBase ppt-MIR160a: 9e-33 PMRD ppt-miR160f: 2e-74 microPC miR160: 0.00003 | UniProt no hits RFAM mir-160: 3e-30 |
Identical with: ppt-miR160f from PMRD (MNEST051364) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
