ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR160
source: miRBase, original name: ppt-MIR160g (MI0005903)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCTTGTATGCCA miRNA* CCATGCAGGGAGTCAGACAGA mismatches: 2 bulges: 0 |
pre-miRNA
CTCATGAAATCAATGGGGAATATTGGACCTGCCTGGCTCCTTGTATGCCATCTGCGAAGCTTGACAAAACTATTGCCAGGGTACATAGCTGCCATGCAGG
GAGTCAGACAGACCGTACGTCTTCCCAGATTTACATGC
dot-bracket secondary structure
..(((((((((..((((((....(((..(((.(((((((((((((((.((.(((.(.(.((((.(((.....))).)))).).).))).)).))))))))
))))))).))).)))......))))))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CTCATGAAATCAATGGGGAATATTGGACCTGCCTGGCTCCTTGTATGCCATCTGCGAAGCTTGACAAAACTATTGCCAGGGTACATAGCTGCCATGCAGG
GAGTCAGACAGACCGTACGTCTTCCCAGATTTACATGC
dot-bracket secondary structure
..(((((((((..((((((....(((..(((.(((((((((((((((.((.(((.(.(.((((.(((.....))).)))).).).))).)).))))))))
))))))).))).)))......))))))))))).)))).
SIMILARITIES| miRBase ppt-MIR160e: 1e-19 PMRD ppt-miR160g: 2e-74 microPC miR160: 0.00003 | UniProt no hits RFAM mir-160: 0.000000000000002 |
Identical with: ppt-miR160g from PMRD (MNEST051365) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
