ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR160
source: miRBase, original name: ppt-MIR160h (MI0005904)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCTGGCTCCTTGTATGCCA miRNA* GCACTCAGGGAGTCAAGCAGG mismatches: 4 bulges: 0 |
pre-miRNA
TTAGTTCAGCATGGGGAGATATCGGATCCGCCTGGCTCCTTGTATGCCAACTGAGAAGCTTGTTGAACATTTTGCCAGGATTCATAGCTGGCACTCAGGG
AGTCAAGCAGGCCATTGGTCTTGCCATGACTTTCAC
dot-bracket secondary structure
.......(((((((.(((((...((.((.((.((((((((((..(((((.(((.(((.((((..((.....))..)))).))).))).)))))..)))))
))))).)).))))....))))).))))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
TTAGTTCAGCATGGGGAGATATCGGATCCGCCTGGCTCCTTGTATGCCAACTGAGAAGCTTGTTGAACATTTTGCCAGGATTCATAGCTGGCACTCAGGG
AGTCAAGCAGGCCATTGGTCTTGCCATGACTTTCAC
dot-bracket secondary structure
.......(((((((.(((((...((.((.((.((((((((((..(((((.(((.(((.((((..((.....))..)))).))).))).)))))..)))))
))))).)).))))....))))).))))).)).....
SIMILARITIES| miRBase ppt-MIR160i: 0.0000000001 PMRD ppt-miR160h: 2e-73 microPC miR160: 0.0004 | UniProt no hits RFAM mir-160: 0.000000008 |
Identical with: ppt-miR160h from PMRD (MNEST051366) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
