ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR160
source: miRBase, original name: ppt-MIR160i (MI0005905)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCTGGCTCCCTGTATGCCA miRNA* GCGTTCAGGGAGTCAAGCAGGC mismatches: 2 bulges: 1 |
pre-miRNA
CGTTAGCACGGAATATGGGATACTGGATCCGCCTGGCTCCCTGTATGCCACCTGCGAAGCATGCTAAAGGTTTTTGCCAGGATTTGCAGCTGGCGTTCAG
GGAGTCAAGCAGGCCTCAAGTCTTCCCGTAACCAGCGCC
dot-bracket secondary structure
.....((.(((..(((((((.(((.((.((((.((((((((((.((((((.(((((((.....((...(((....))).)).))))))).)))))).)))
))))))).)).))..)).)))..))))))).)).).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CGTTAGCACGGAATATGGGATACTGGATCCGCCTGGCTCCCTGTATGCCACCTGCGAAGCATGCTAAAGGTTTTTGCCAGGATTTGCAGCTGGCGTTCAG
GGAGTCAAGCAGGCCTCAAGTCTTCCCGTAACCAGCGCC
dot-bracket secondary structure
.....((.(((..(((((((.(((.((.((((.((((((((((.((((((.(((((((.....((...(((....))).)).))))))).)))))).)))
))))))).)).))..)).)))..))))))).)).).)).
SIMILARITIES| miRBase ppt-MIR160b: 0.000000000002 PMRD ppt-miR160i: 4e-75 microPC miR160: 0.0001 | UniProt no hits RFAM mir-160: 2e-43 |
Identical with: ppt-miR160i from PMRD (MNEST051367) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
