ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: miRBase, original name: ppt-MIR166b (MI0005659)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGCCGCATGGACCGAAG mismatches: 5 bulges: 0 |
pre-miRNA
CTTTGTTGTGAGGAATGCCGCATGGACCGAAGCCATGCGCTCCACATCTAGACGGTGATTTGGACGCTATGCTTCGGACCAGGCTTCATTCCCCTCAGCA
CAG
dot-bracket secondary structure
((.(((((.(.((((((..((.(((.(((((((...(((.((((.(((........))).)))))))...))))))).))).))..)))))).).)))))
.))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CTTTGTTGTGAGGAATGCCGCATGGACCGAAGCCATGCGCTCCACATCTAGACGGTGATTTGGACGCTATGCTTCGGACCAGGCTTCATTCCCCTCAGCA
CAG
dot-bracket secondary structure
((.(((((.(.((((((..((.(((.(((((((...(((.((((.(((........))).)))))))...))))))).))).))..)))))).).)))))
.))
SIMILARITIES| miRBase ppt-MIR166a: 0.00000000002 PMRD ppt-miR166b: 9e-54 microPC miR166: 0.0000003 | UniProt no hits RFAM mir-166: 9e-48 |
Identical with: ppt-miR166b from PMRD (MNEST051369) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Fattash I, Voss B, Reski R, Hess WR, Frank W, BMC Plant Biol. 7:13(2007)., "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution"
[2] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
