ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: miRBase, original name: ppt-MIR166g (MI0005910)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGCCCCCTGGCCCGAAG mismatches: 5 bulges: 0 |
pre-miRNA
GTGCGGAGGTGTTTAGGTGAAACTCTGCTGCGAGGAATGCCCCCTGGCCCGAAGGCATGTACTTCTCCCTCTTCGAATGGTGTGAGCATCAAGCTTCGGA
CCAGGCTTCATTCCCCTCAGCGCAGTTACATTTCGATATTCACGTC
dot-bracket secondary structure
..(((..((((((.(((((.((((.(((((.(.((((((...(((((.((((((.(.((...(((.(((.........)).).)))...)).))))))).
)))))...)))))).).))))).)))).))))).))))))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGCGGAGGTGTTTAGGTGAAACTCTGCTGCGAGGAATGCCCCCTGGCCCGAAGGCATGTACTTCTCCCTCTTCGAATGGTGTGAGCATCAAGCTTCGGA
CCAGGCTTCATTCCCCTCAGCGCAGTTACATTTCGATATTCACGTC
dot-bracket secondary structure
..(((..((((((.(((((.((((.(((((.(.((((((...(((((.((((((.(.((...(((.(((.........)).).)))...)).))))))).
)))))...)))))).).))))).)))).))))).))))))..))).
SIMILARITIES| miRBase ppt-MIR166e: 0.000000000008 PMRD ppt-miR166g: 3e-79 microPC miR166: 0.0000005 | UniProt no hits RFAM mir-166: 1e-47 |
Identical with: ppt-miR166g from PMRD (MNEST051374) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
