ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR166
source: miRBase, original name: ppt-MIR166i (MI0005912)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGATTGACGCATGGCACGAAG mismatches: 5 bulges: 0 |
pre-miRNA
CTTGGAGATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCT
AAGTTGCATCATGTAGTGCT
dot-bracket secondary structure
...........((((.(((((.(.((.(((((.(((.((.(((..((((((.((((((....)))..)))))))))..))).)).))).))))).)).).
))))).))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
CTTGGAGATTGGATGGGACTTTGTCGTGGGGATTGACGCATGGCACGAAGCTAACATCCTGAGATCAGTTGCTTCGGACCAGGCTTCATTCCCCTTGCCT
AAGTTGCATCATGTAGTGCT
dot-bracket secondary structure
...........((((.(((((.(.((.(((((.(((.((.(((..((((((.((((((....)))..)))))))))..))).)).))).))))).)).).
))))).))))..........
SIMILARITIES| miRBase ppt-MIR166b: 0.0000001 PMRD ppt-miR166i: 8e-64 microPC miR166: 0.0000004 | UniProt no hits RFAM mir-166: 6e-37 |
Identical with: ppt-miR166i from PMRD (MNEST051376) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
